San Diego Supercomputer Center helps researchers reveal structure of autism-related protein

San Diego 14 June 2007As a result of mapping the structure of the protein complex implicated in autism spectrum disorders, a research team led by scientists at the Skaggs School of Pharmacy at the University of California San Diego (UCSD), and aided by computational modelling at the San Diego Supercomputer Center (SDSC) at UCSD, has discovered how particular genetic mutations affect this complex and contribute to the developmental abnormalities found in children with autism. Their work, published as the cover article in the June issue of the journal Structure, should help scientists pinpoint the consequences of genetic abnormalities associated with the disorder.

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The research involved a fruitful collaboration between experimental approaches and computer-based modelling methods in which the researchers explored the three-dimensional structure of key proteins, the intricate interactions that take place between them in forming synapses or junctions in the nervous system, and the aberrations that result in the developmental disorder of autism. SDSC's collaboration involved the work of computational biologist Igor Tsigelny, Ph.D., also at the Skaggs School of Pharmacy.

"By understanding the three-dimensional structure of the normal protein, researchers can now make predictions about how mutations in the gene affect the structure of the gene product", stated first author Davide Comoletti, Ph.D., UCSD research associate at the Skaggs School of Pharmacy.

Autism spectrum disorders are developmental disabilities that cause impairments in social interaction and communication. Both children and adults with autism typically show difficulties in verbal and non-verbal communication, interpersonal relationships, and leisure or play activities.

Davide Comoletti and colleagues studied the neuroligin family of proteins that are encoded by genes known to be mutated in certain patients with autism. The neuroligins, and their partner proteins, the neurexins, are involved in the junctions, or synapses, through which cells of the nervous system signal to one another and to non-neuronal tissues such as muscle. These structural studies on neuroligins and neurexins represent a major step toward defining the synaptic organisation at the molecular level.

As an initial step in the research, SDSC scientist Igor Tsigelny had proposed the three-dimensional model of the neuroligin protein, using homology modelling and molecular mechanics simulations. These methods are used to construct the three-dimensional structures of proteins using the principles of molecular physics and bioinformatics.

"Once this structure was available, my colleagues carried out very sophisticated experimental and computational work that identified the possible interactions between neuroligins and their partner proteins, neurexins", stated Igor Tsigelny. "Then, once again we used computational methods to provide more detailed information about the inter-molecular interactions and verification of the structure of the complex."

"Normally, individual neuroligins are encoded to interact with specific neurexin partners. The two partners are members of distinct families of proteins involved in synaptic adhesions, imparting stickiness that enables them to associate so that synapses form and have the capacity for neurotransmission", stated Palmer Taylor, Ph.D., Dean of the Skaggs School, Sandra & Monroe Trout Professor of Pharmacology, and co-principal investigator of the study, along with Jill Trewhella, Ph.D., of the University of Sydney, Australia and University of Utah.

Incorrect partnering that results when a mutant neuroligin fails to properly align at synapses helps explain why some autism spectrum disorders are manifested in subtle behavioural abnormalities that are seen at an early age.

"Abnormal synaptic development in nerve connections is likely to lead to cognitive deficits seen in patients with autism", stated Palmer Taylor. He added that synapse formation and maintenance occurs early in development when the infant brain is still plastic and formative. Therefore, by understanding the structural mutations that affect neurotransmission during development, new leads into drug therapies may emerge.

"We really don't know what causes autism, but this research represents a solid starting point", stated Sarah Dunsmore, Ph.D., programme director with the National Institute of General Medical Sciences, part of the National Institutes of Health, which partly supported the study. "The work suggests that genetic mutations that alter the shape or folding of adhesion proteins in the nervous system influence their interactions. This is another example of how research on basic biological questions, such as the three-dimensional structures of proteins in the brain, can yield valuable medical insights."

Palmer Taylor and colleagues have been studying the structure and function of acetylcholinesterase - a structurally related protein that mediates neurotransmission between nerves and between nerve and muscle - for the past 30 years. They began studying the neuroligins because of the similarity in structure and amino acid sequence with acetylcholinesterase.

The study was a multi-national collaboration, employing a synchrotron and a neutron source at two national laboratories to collect the X-ray and neutron scattering data necessary for resolving the structure. Additional contributors to this study include Alexander Grishaev, National Institute of Diabetes and Digestive and Kidney Diseases, Bethesda, Maryland; and Andrew E. Whitten, Bragg Institute, Australian Nuclear Science and Technology Organization.

This work was supported in part by grants from the National Institutes of Health, the United States Department of Energy, and the Cure Autism Now Foundation.


Leslie Versweyveld

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